A wide extent of inter-strain diversity in virulent and vaccine strains of alpha-herpesviruses.
Szpara et al. PLoS Pathog 7(10): e1002282


A guide to this website, with links to related resources  

A guide to the scripts with instructions on their use  

Download links for data and files  

Supplementary Figures and Tables  



Table of Contents

Assembly and Analysis Scripts

The assembly and analysis scripts are available for download here, both individually and as a bundle. All scripts presented here were either written or adapted by Lance Parsons.

If you download the scripts individually, you may want to make the Perl and Python scripts executable.

Details about how the scripts were used are available in the the Scripts section of this website. The same information is in the downloadable file: Szpara_et_al_2011, Script Instructions (pdf)

Gzipped bundle of scripts (.tar.gz):

All raw sequence data have been deposited at the NCBI Short Read Archive. Please note that PRV-genome records are not released and active until publication.

Finished Genomes

All finished genomes can be found in the NCBI Nucleotide Repository:

SNP Data Files

Unfiltered and filtered SNP lists (.tar.gz)

© 2011 The Trustees of Princeton University

For questions about this website, send mail to the
Genomics Bioinformatics Group at Princeton University.
Last updated: 27 December 2011